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8 Choices for the Best Fungicide for Apple Trees

When you first set out to grow apples, you probably pictured a handsome, sturdy little tree. You likely thought about plucking bright, crispy, deliciously sweet apples from its branches. Maybe you thought about the apple pies you’d bake or the look on your neighbor’s face when you handed them a bag filled with your amazing, homegrown fruit.

You may not have considered, though, that all the painstaking care and attention you put into raising your apple tree could be thwarted by a fungal pathogen, leaving you wondering if hope for a yearly harvest of apples is lost.

Fear not. Your apple tree can still be successful. Preventative action with the right fungicide can prevent a fungal disease from appearing at all. And, if you act swiftly, some fungicides can even tackle fungal infections already plaguing your tree.

To help you avoid a tree loss situation, we’re going to talk about 8 options for the best fungicide for apple trees.

Closeup of healthy red apples on a tree after a rainstorm.

Our Top Picks

Best Systemic Fungicide:
Hi-Yield Vegetable, Flower, Fruit and Ornamental Fungicide

Best Contact Fungicide:
Southern Ag Captan 50W Fungicide

Recommended Sprayers

Best Small Sprayer for 1-2 trees:
CHAPIN 2 Gallon Sprayer

Best for Spraying 3+ Trees:
NorthStar High-Pressure Tree/Orchard Sprayer (Matt’s favorite!)
NorthStar Boomless Broadcast and Spot Sprayer (Budget option)

Introduction to Fungicides

So, you’d like to protect your tree from a fungal infection but don’t know the differences between them. Let’s start with the different kinds of fungicides that are on the market.

Categories of Fungicides

Fungicides fall into two general categories: contact/protectant and systemic.

Contact (or protectant) fungicides only protect the areas where the spray touches the surface of the plant. These fungicides do not penetrate the plant and they require careful spraying to ensure all plant surfaces have been covered. These fungicides need to be repeatedly sprayed because they will wash off with rain and new growth is not protected.

Systemic fungicides move throughout the plant and are capable of protecting more than just the location that was sprayed. Unlike contact/protectant fungicides, systemic fungicides can be curative, stopping and reversing infections after they have begun.

A woman spraying orchard trees.  Fungicides for apple trees are applied via spraying methods.

Organic and Inorganic

Perhaps one of the most confusing and frustrating things you encounter as you search for the best fungicide for your apple tree is that the term “organic” doesn’t always mean the same thing to everyone.

The chemistry definition and the USDA definition of “organic” differ. So, when you hear or read that a fungicide is “organic” or “inorganic,” it might help to think “naturally occurring” or “synthetic,” instead. Hence, you may encounter a copper or a sulfur fungicide that’s still labeled as organic.

Which Type Makes the Best Fungicide for Apple Trees

Unfortunately, there isn’t one best fungicide for apple trees because – in addition to varying mechanisms of action – factors such as which type of fungal infection you’re trying to guard against, environmental conditions, local climate, and your own personal considerations are all important.

In our list of best fungicides for apple trees, we’ll provide our pick for the best fungicide within various categories and give some information on each category.

8 Best Fungicides for Apple Trees

Best Systemic Fungicide

Hi-Yield Vegetable, Flower, Fruit and Ornamental Fungicide

Hi Yield Chlorothalonil fungicide

Chlorothalonil is a chemical used as a broad-spectrum fungicide that’s sometimes sold under names such as Bravo or Daconil. It’s effective on numerous types of plants including orchard crops such as apple trees. Some chlorothalonil fungicides are specially formulated so that they’re resistant to the weather. This chlorothalonil fungicide by Hi-Yield is systemic and is both preventative and curative.


  • Effective on many different fungal pathogens
  • Offers weather-resistant protection
  • Can be used on numerous kinds of plants
  • One of the most widely used kinds of fungicides
  • Preventative and curative


  • Toxic to people, birds, and aquatic life
  • Synthetic
  • Poses moderate ecological risk, particularly if it gets in water

Best Protectant Contact Fungicide

Southern Ag Captan 50W Fungicide

Southern Ag - 01600 - Captan Fungicide - 8oz, White Bottle

Captan is a form of dicarboximide and totally synthetic. It’s effective against diseases such as cedar apple rust, black, white, bitter, and blossom end rot, early and late blight, brooks spot, and downy mildew scab. However, it’s not ideal for treating fire blight but it is compatible with many other fungicides.

Although it’s non-organic, it isn’t particularly toxic in low doses and breaks down quickly in the soil. The Hi-Yield captan fungicide comes in powder form. While this does require extra precaution to avoid inhaling it, it allows additional versatility in how you’re able to use it. It can be applied both as a powder and in a solution. As always, read and follow label instructions diligently.

You can find this captan fungicide from Nature Hills Nursery.


  • Breaks down quickly in the soil
  • Usable as both a dry powder and in a liquid solution
  • Particularly effective on many different fruit trees including apple trees
  • Compatible with some other fungicides. Check label instructions


  • Not effective against some common fungal infections
  • Synthetic
  • Restricted in Alaska, DC, Hawaii, and Florida
  • Toxic

Runner-up Systemic Fungicide

Dow AgroSciences Eagle 20EW Fungicide

Dow AgroSciences 173917 Eagle 20EW Fungicide, 16oz

The Eagle 20EW Fungicide contains an ingredient called myclobutanil. Myclobutanil is used as a systemic fungicide. While most fungicides are solely preventative, systemic fungicides, such as this one, are curative as well. Furthermore, one of myclobutanil’s specialties is the apple tree.

This pick has overwhelmingly positive reviews and you can find this fungicide on Amazon.


  • It’s a systemic fungicide
  • Curative as well as preventative
  • Highly potent
  • Label for use on a wide variety of plants
  • Effective on many fungal pathogens


  • Considered hazardous
  • Synthetic
  • Poses moderate environmental and ecological risks

Best Bulk Copper Fungicide

Monterey Liqui-Cop Liquid Copper Fungicide

Liqui-Cop Copper Fungicide

Copper fungicides are a great preventative option during the dormant season. They are very popular, with so many different options out there, that it would be wrong to settle on just one best pick. Although copper is a common (and universally loved) fungicide, this copper fungicide is an option that stands out for its weather-resistant formulation. Sold in bulk containers of 1 or 2 gallons, it’s perfect for a backyard gardener with 2 or more trees.


  • Weather-resistant
  • Available in gallon sizes


  • Very specific temperature range for spraying
  • Can be phytotoxic

Best Ready-to-Use Copper Fungicide

Bonide 775 Copper Fungicide

Bonide 775 Copper Fungicide Rtu Natural 1 Qt

Copper fungicide is one of the most common types of fungicides. Mixtures and proportions of copper in the solution vary, but they’re all organic and will be effective against fungal infections including apple scab, powdery mildew, fire blight, rust, and black spot.

Read the label carefully because copper fungicide can be phytotoxic to apple trees.

This copper fungicide by Bonide has excellent reviews. Furthermore, you’re able to find this, or a very similar spray, at almost any hardware or gardening store. Online, you can find it for a low price on Amazon.


  • Perhaps the most common and widely available type of fungicide
  • Inexpensive
  • Thousands of positive ratings
  • Works great on apple trees
  • Easy to use
  • Organic


  • Can be detrimental if applied in high temperatures
  • Vulnerable to being washed or blown away by weather

Pure PetraTools Neem Oil

Pure PetraTools Neem Oil, 100% Cold Pressed, Ultra High Azadirachtin Content, Essential Oil for Skin, Hair and Nails,Plant Concentrate, Leaf Polish, (No Additional Additives), OMRI Listed (17 Fl Oz)

Oil can serve as a non-chemical alternative to other fungicides. Neem oil, such as this one from Petra, comes from the seeds of the neem tree and can be used as a pesticide as well. The active ingredient in neem oil, azadirachtin, is safe and gentle on the environment while also being a formidable defense against infections such as rust, black spot, leaf spot disease, and mildews. Find this organic oil fungicide on Amazon.


  • Organic
  • Safe
  • Lots of excellent reviews
  • Works great as a pesticide and can have fungicide properties


  • Can be harmful to your tree if applied in high temperatures
  • More potent chemical alternatives are available

Bonide Sulfur Plant Fungicide

Bonide Sulfur Plant Fungicide, 1 lb. Ready-to-Use Micronized Spray or Dust for Organic Gardening, Controls Common Diseases

Sulfur has been used as a fungicide for thousands of years. It’s organic and effective at preventing illnesses such as rust, mildew, and black spot. Additionally, it’s safe for people and animals.


  • One of the oldest kinds of fungicide in existence
  • Organic
  • Works great as a pesticide as well as a fungicide
  • OMRI listed product
  • Easy to use


  • Some plants can’t handle sulfur fungicides
  • Not compatible with oil fungicides
  • Can damage plants when applied in high temperatures

A Homemade Mixture

Most fungicides aren’t very expensive, but if you can’t get to the store, don’t want to wait for something to be shipped, or are just trying to save money, perhaps making your own fungicide from home is the right option for you. Plus, this homemade mixture is simple, made up of ingredients you likely already have at hand, and will be gentle on your apple tree and the environment.

Mix 4 teaspoons of baking soda (sodium bicarbonate) and 1 teaspoon of dish soap with one gallon of water. Spray this mixture directly onto the leaves of your tree.


  • Free
  • Organic
  • Easy on the environment
  • Not toxic


  • There are more potent fungicidal options available

How Fungi Can Affect a Tree

Symptoms vary between diseases, but it’s unlikely you’ll find any of them fun to look at. Some common effects on apple trees caused by fungal disease include:

  • Lesions in the tree’s bark
  • Withered leaves
  • Ugly spots or holes in leaves
  • Putrid fruit
  • Long-term damage to the tree overall

There are many fungi that a tree could be affected by, and different plants have different vulnerabilities. The apple tree is no exception.

Signs of apple scab lesions on green apples growing on a tree.
Signs of apple scab, a common fungal disease affecting apple trees.

Types of Fungi to Which Apple Trees are Susceptible

The apple tree, or malus domestica, is susceptible to various fungal maladies. Infections such as apple scab, rot, rust, and mildew are quite unsightly, can decimate your tree’s yield, and can also seriously injure it. For more in-depth information, check out our post on the 10 Common Apple Tree Diseases for what you need to know to identify, treat, and prevent fungal diseases.

Do I Need the Strongest Available Fungicide?

It’s generally good to use the gentlest fungicide that’s effective for your apple tree. The most potent option isn’t always the right choice and can put undue strain on your tree and the environment. To kill a bug in your house, choose a flyswatter, not a nuke. Exaggeration aside, it’s usually best to try something more natural, especially if your focus is preventive.

Application Tips

When applying any fungicide, always follow label instructions carefully. Different fungicides will be used on different parts of your apple tree. It’s never a bad idea to put on a mask and long sleeves when mixing and applying your fungicide.

Woman spraying fruit trees while in bloom.

Additionally, to skip a step, try purchasing a version of your desired fungicide in a bottle that has a hose nozzle attachment. It’ll automatically create the mix in the desired proportions as you spray. Be sure to shake the bottle well.

Use What Works for You and Your Tree

You’re unlikely to go wrong with any of the fungicides on this list. They’re all great fungicides for your apple tree. The Dow AgroSciences Eagle Fungicide, in particular, is a great option for a potent, systemic fungicide. There are many great fungicidal options on the market and, if you can’t find one on this list, there are always others that are very similar. Searching for a fungicide by its active ingredient will lead you to lots of options.

Here at Minneopa Orchards, we’re passionate about apples and apple trees. That’s why our website has everything you need (and more) on the subject.

Excited for more apple content? Visit my apple trees page to learn more about apple planting, growing, harvesting, cooking, and more!

Shopping for your garden can get overwhelming, fast. So if you’re looking for advice on garden tools and garden supplies, then you’re in the right place!


Tuesday 18th of October 2022

What can I use on my Apple Trees now with the fruit still on and the fruit is safe? I have Mildew and Rust on the leaves and Brown spots on Granny Smith Apples.


Saturday 22nd of October 2022

With disease, there is little you can do to stop it once it's started. A lot of the disease/fungicide products are really meant to be used as prevention.

Whatever you use, make sure to check the Pre-Harvest Interval (PHI) - it should be on the label and it's the safe time from spraying to harvest.


Wednesday 28th of September 2022

Chlorothalinil is not labeled for use on apples. Most sources say not to use it on apples. Using on my apple trees would make my life much easier since I have several different fruits in my small orchard. Several apple orchards that I have read about DO use it on apples. What are the risks and are there any application restrictions such as not using after the blooms drop and fruit forms? Thank you.


Monday 3rd of October 2022

Hi Tim - Sorry, I'm not sure about that.